2022-07-29 19:12:33

General information

Input file: /home/hendrik.weisser/Code/Proteomics_QC_public/example/merged.mzTab

4 samples processed:

  1. 20220223e_JR_SST_02
  2. 20220228a_JR_SST_02
  3. 20220301a_JR_SST_03
  4. 20220301a_JR_SST_05

Identification level

Max. q-value (PSM level): 0.01

sample MS2 spectra id. rate (%) PSMs charged peptides
(incl. mods)
unique peptides
(incl. mods)
unique peptides
(w/o mods)
protein groups
1 19973 21.3 4251 3061 2807 2756 1980
2 19918 13.8 2753 1885 1749 1705 1520
3 15217 9.3 1419 871 815 793 916
4 15960 10.8 1722 1027 958 943 989

Chromatography

The median retention time (RT) of a peptide in each sample is compared to its median RT across all samples. Only peptides identified in at least 3 samples are considered. For scaling purposes, 1% of outliers in terms of RT deviation were excluded from the plot.

Quantification level

Peptides

Proteins

Heatmap of protein abundances (log-scale)


Abundances are shown for 719 proteins (or ambiguity groups) that were quantified in at least half of all samples (i.e. min. 2 samples).