2022-07-29 19:12:33
Input file: /home/hendrik.weisser/Code/Proteomics_QC_public/example/merged.mzTab
4 samples processed:
Max. q-value (PSM level): 0.01
| sample | MS2 spectra | id. rate (%) | PSMs | charged peptides (incl. mods) |
unique peptides (incl. mods) |
unique peptides (w/o mods) |
protein groups |
|---|---|---|---|---|---|---|---|
| 1 | 19973 | 21.3 | 4251 | 3061 | 2807 | 2756 | 1980 |
| 2 | 19918 | 13.8 | 2753 | 1885 | 1749 | 1705 | 1520 |
| 3 | 15217 | 9.3 | 1419 | 871 | 815 | 793 | 916 |
| 4 | 15960 | 10.8 | 1722 | 1027 | 958 | 943 | 989 |
The median retention time (RT) of a peptide in each sample is compared to its median RT across all samples. Only peptides identified in at least 3 samples are considered. For scaling purposes, 1% of outliers in terms of RT deviation were excluded from the plot.
Abundances are shown for 719 proteins (or ambiguity groups) that were quantified in at least half of all samples (i.e. min. 2 samples).